imars3d.ui.widgets package

Widgets for iMars3D’s filters and functions.

Submodules

imars3d.ui.widgets.denoise module

Widgets for denoise.

class imars3d.ui.widgets.denoise.Denoise(*, denoise_action, denoise_bilateral_sigma_color, denoise_bilateral_sigma_spatial, denoise_complete_status, denoise_median_kernel, denoise_method, parent, name)

Bases: Parameterized

Noise reduction widget.

Widget for the denoise filter from iMars3D, must have a parent widget with validate ct stack.

apply()

Apply denoise.

denoise_action()

denoise_bilateral_sigma_color = 0.02

denoise_bilateral_sigma_spatial = 5

denoise_complete_status = False

denoise_median_kernel = 3

denoise_method = 'bilateral'

name = 'Denoise'

panel(width=200)

App card view.

parent = None

imars3d.ui.widgets.gamma_filter module

Widgets for gamma filter.

class imars3d.ui.widgets.gamma_filter.GammaFilter(*, auto_threshold, auto_tomopy_threshold, axis, execute, median_kernel, parent, selective_median_filter, status, threshold, tomopy_threshold, name)

Bases: Parameterized

Gamma filter widget.

Widget for the gamma filter from iMars3D, must have a parent widget with validate ct stack.

apply()

Apply gamma filter.

auto_threshold = True

auto_tomopy_threshold = True

axis = 0

execute()

median_kernel = 5

name = 'GammaFilter'

panel(width=200)

App card view.

parent = None

selective_median_filter = True

status = False

threshold = 65530

tomopy_threshold = 13107

imars3d.ui.widgets.ifc module

Widgets for intensity fluctuation correction.

class imars3d.ui.widgets.ifc.IntensityFluctuationCorrection(*, air_pixels, auto_detect_air, execute, parent, sigma, status, name)

Bases: Parameterized

IFC widget.

Widget for the intensity fluctuation correction filter from iMars3D, must have a parent with valid ct stack.

air_pixels = 5

apply()

Apply IFC.

auto_detect_air = False

execute()

name = 'IntensityFluctuationCorrection'

panel(width=200)

App card view.

parent = None

sigma = 3

status = False

imars3d.ui.widgets.normalization module

Widgets for normalization.

class imars3d.ui.widgets.normalization.Normalization(*, auto_cutoff, cutoff, execute, parent, status, name)

Bases: Parameterized

Normalization widget.

Widget for the normalization filter from iMars3D, must have a parent widget with validate ct, ob, dc stack.

apply()

Apply normalization.

auto_cutoff = True

cutoff = 1.0

execute()

name = 'Normalization'

panel(width=200)

App card view.

parent = None

status = False

imars3d.ui.widgets.ring_removal module

Widgets for ring removal.

class imars3d.ui.widgets.ring_removal.RemoveRingArtifact(*, correction_range, execute, kernel_size, parent, status, sub_division, name)

Bases: Parameterized

Ring removal widget.

widget of ring artifact removal filter from iMars3D, must have a parent widget with valid ct stack.

apply()

Apply ring removal.

correction_range = (0.9, 1.1)

execute()

kernel_size = 5

name = 'RemoveRingArtifact'

panel(width=200)

App card view.

parent = None

status = False

sub_division = 10

imars3d.ui.widgets.rotation module

Widgets for rotation.

class imars3d.ui.widgets.rotation.FindRotationCenter(*, atol, auto_atol, execute, parent, rot_center, status, name)

Bases: Parameterized

Rotation center finder widget.

widget of rotation center finder filter from iMars3D, must have a parent widget with valid ct stack.

apply()

Apply rotation center finder.

atol = 0.2

auto_atol = True

execute()

name = 'FindRotationCenter'

panel(width=200)

App card view.

parent = None

rot_center = 0.0

status = False

imars3d.ui.widgets.tilt module

Widgets for tilt correction.

class imars3d.ui.widgets.tilt.TiltCorrection(*, cut_off_angle_deg, execute, parent, status, tilt_search_bounds, name)

Bases: Parameterized

Tilt correction widget.

Widget for tilt correction from iMars3D, must have parent widget with valid ct stack.

apply()

Apply tilt correction.

cut_off_angle_deg = 0.001

execute()

name = 'TiltCorrection'

panel(width=200)

App card view.

parent = None

status = False

tilt_search_bounds = (-5.0, 5.0)